If you are only having the top of the chassis powder coated then you do not need to do anything to the chassis, the uncoated bottom is the ground plane, this is why star washers are used on all ground lugs, etc. on all Bottlehead kits.
I have a powder coat system; there is always overspray so I always end up sanding the bottom of the plate. The first time I powder coated I taped the bottom of the chassis plate as done with spray paint, big mistake. The openings in the chassis were plugged with hard powder and even using powder coat tape it was a pain to remove. The openings need to be clear of any obstructions, resulting in overspray and sanding with orbital sander, makes for a extremely nice smooth looking bottom plate.