The spike goes a little higher, but also for a far briefer period of time. As long as this spike dives back down to 0V, there is no cause for alarm here. In the last revision of the Speedball manual, we have completely eliminated this check from the upgrade process.
(If you have headphones plugged in while turning the amplifier on, the voltage spike will be considerably smaller, as the headphone impedance is significantly lower than the impedance of the resistors used to charge these caps) I leave my HD-800's plugged into my Crack when I switch it on.