Good, you tried swapping the tubes. Since the problem stayed in one channel, it's probably not the tubes.
Next thing I would want to make sure of is the source, by swapping the input cables. If the problem still stays on the same channel, return the input cables to their original positions, and swap the output cables.
If the problem persists in the same channel after those two additional swaps, then you will have localized the trouble in the FP, and the tubes are probably fine.
Then, it's time to see if you can find out what is different between the good channel and the bad channel. You might want to start with taking resistance readings or Voltage readings as per the check-out in the construction manual. Or, you may just want to start with a good visual inspection of the bad channel to see if you can spot anything amiss, particularly any suspicious solder joints or something out of place. One good place to start looking might be around the tube socket of the bad channel to see that the heater connections are good. Judging how bright a tube glows can be misleading; better to check to see that the heater Voltage is what it is supposed to be.
Intermittent problems can be quite challenging to find sometimes; other times they jump right out when you start hunting.
Oh, if you get to the point of checking resistances and Voltages, you might want to make a little chart of your readings and any discrepancies for reference as your troubleshooting goes forward.