Pictures are a little hard to snap with the massive caps and the Speedball boards in the way but I'll do my best with the angles I can sneak in. The pictures are taken with Maxhawk's tube switching speedball board installed but the state is the exact same if I use the stock Speedball board. I have ensured I am in 12AU7 mode on the switching board.
Note: All 6 LED's are lit.
Are the 2.49K resistors present on the headphone jack?
Yes they are (picture attached).
Is the headphone jack grounded exactly as it is in the manual?
No. The jack's S terminals (both) are connected to 12. It is also grounded to 3 (which routes to the volume pot's ground terminal) instead of pulling a wire all the way across from the pot's ground directly. 3 also grounds both speedball boards (that is all ther connections at 3).
The T and R connections of the headphone jack are hooked up to 10 and 6, which are only wired to their respective output caps.