I finally got the replacement parts, many thanks to Eileen. Had some issues with NZ post sending them back to the US for some reason, but the second time sent they arrived within a week.
I replaced the LEDs on the side where they weren't lighting, but when I went to put the board back, I noted that I'd installed the 'top' towards the back, so re-inserted correctly. Now the new LEDs are at the right, which was the side which was lighting up before hand. The LEDs which were lighting are now on the left, and they refuse to light now - so it's pretty clear that there is a issue with that side of circuit, if the LED + transistors which work on the right side now do not work on the left.
Unfortunately, I'm at a complete loss as I've rechecked all of the connections, re soldered all the wires to that main board 10 times at least now.
Any ideas where I should be focusing my attentions now?
One more thing, all of the LEDs on the small boards light up initially, but over a period of about 2 minutes they gradually dim until they are fully dark.
Aaron