On the new kit, we made a single small PC board up front, the two pairs of R2 resistors look dramatically different physically, the 2N2907 was swapped out with a PN2907, which is also physically very different than a 2N2222/2N2907, we reduced the number of jumpers to the big board, we split up the installation instructions to do the small board first, then test, then do the big board, and we provided some diagnostic flow charts in the manual to help with debugging. We also switched the big board R2 to a 47K/2W resistor, which was intended in the first revision but it just didn't fit!
The error you made would be very, very difficult to do with the new Speedball board, as the PC board up front has holes that line up with each terminal strip terminal, and it's just a short piece of wire that connects between each one.