In the best of all worlds, I myself would use cheap, worn tubes until everything is running correctly and the filament voltages look perfect. I can do that, because we have plenty of tubes lying around. The only reason for such care is that the EMLs are really expensive, and I have a substantial portion of Scottish DNA. My grandfather used to say we were descended from the finest horse thieves in Scotland - also the reason my ancestor moved to America... :^)
But I'm assuming you don't have a spare pair of used 300Bs. So yeah, build it stock, take it slow and careful, and do all the tests. Be extra careful about the power transformer input voltage (starts on page 29). If there are any questions, this is the place to bring them up. We will be paying special attention to any confusion or problems, until there are a few successful builds.
A few hours at a slightly wrong filament voltage will not harm most tubes, but EML specifies a very tight +/-4% on the filament voltage, and conforming to that spec is important to retain their warranty.